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Created with Raphaël 2.2.05Jul43219Jun1125Jan15821Sep28Apr211723Sep5Aug29Jul2827725May242318171226Apr20121124Mar1810922Feb171410931Jan201267Dec30Nov1615105328OctMerge branch 'dev' into 'master'mastermasteradding testspecify /home/centos by default for bind arg in singularity image, re add launch blaster scriptdevdevreadme, cleaning, 2 threads for blasterReadme, 2 threads for blaster rulerm singularity image + add how install TEfinder2.31 on readme + clean scripts + add 1 thread for blaster ruletest on 2 Bd genomes with 8 cores and 16 gb ramadd panTEannot Figure 1 from articleREADME + test on 2 Bd genomes + blaster launched directly by snakemakeResolved merge conflict in README.md 2Resolved merge conflict in README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdMerge branch 'dev' into 'master'release v1Comment rm in rule matcherslurmslurmCorrect a merge errorMerge with dev branchtest slurmslurmcongif 63 accsrm TEannot Factory// convCoord (per chr) + rm TEannot FactoryUpdate TEannot factoryEdit Readme to adapt it to the slurm addition changesEdit run_Snakemake to have both slurm and local usage ready to useAdapt workflow for slurm job managerAdapt workflow for slurm job manageroptimize convcoord.py (loop)update tefinder versionupdate sif containertefinder path, export '/mnt' folder for singularityAdd simple or long statistics + update TEfinder (rm executables) + simplify TEannot Factory