README.md

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# GraphstatsR <a href="https://forgemia.inra.fr/etienne.rifa/graphstats"><img src="man/figures/graphstatsr_150px.png" alt="ispickr" align="right" width="150" style="margin-top: 10px; margin-left: 20px;"/></a>

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A shiny app allowing users to generate advanced interactive graphics and statistical tests. 

Online instance here: https://graphstatsr.sk8.inrae.fr/

## Prerequisites

R4.4.2 or upper is required (https://pbil.univ-lyon1.fr/CRAN/bin/)


* Linux

```bash
sudo apt-get install r-base git libssl-dev cmake libcurl4-openssl-dev libgmp3-dev libmpfr-dev zlib1g-dev
```

* Windows

[Rtools](https://cran.r-project.org/bin/windows/Rtools/) and [git](https://git-scm.com/download/win) are required.


## Installation

* In R console: 
You can install the released version of graphstats from [this
repository](https://forgemia.inra.fr/etienne.rifa/graphstats) with:

``` r
install.packages("renv")
options(renv.config.gitlab.host = "https://forgemia.inra.fr")

renv::install("gitlab::etienne.rifa/graphstats@master")

```

## To run Shiny app in R

``` r
library(graphstatsr)
graphstatsr::run_app()
```

## Toy dataset

Features table and metadata files are available in the `dataset` folder to test Graphstats. (`inst/dataset` in the git repo)

```r
dir( system.file("dataset/", package = "graphstatsr") )
```