diff --git a/.gitignore b/.gitignore
index 61e23c43fc4960630c2e1d6267011ff943df155f..bef92460568ca779f830417295512f9f81ef0fb6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -50,6 +50,7 @@
!*.yaml
!Snakefile
!*.smk
+!*.svg
# 3) add a pattern to track the file patterns of section2 even if they are in
# subdirectories
diff --git a/workflow/doc/fig/rule_dag.svg b/workflow/doc/fig/rule_dag.svg
new file mode 100644
index 0000000000000000000000000000000000000000..b225cdd182b2b373ef574469df6b4734954f819a
--- /dev/null
+++ b/workflow/doc/fig/rule_dag.svg
@@ -0,0 +1,493 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
+ "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
+<!-- Generated by graphviz version 2.40.1 (20161225.0304)
+ -->
+<!-- Title: snakemake_dag Pages: 1 -->
+<svg width="1382pt" height="620pt"
+ viewBox="0.00 0.00 1382.00 620.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
+<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 616)">
+<title>snakemake_dag</title>
+<polygon fill="#ffffff" stroke="transparent" points="-4,4 -4,-616 1378,-616 1378,4 -4,4"/>
+<!-- 0 -->
+<g id="node1" class="node">
+<title>0</title>
+<path fill="none" stroke="#d87556" stroke-width="2" d="M784,-36C784,-36 754,-36 754,-36 748,-36 742,-30 742,-24 742,-24 742,-12 742,-12 742,-6 748,0 754,0 754,0 784,0 784,0 790,0 796,-6 796,-12 796,-12 796,-24 796,-24 796,-30 790,-36 784,-36"/>
+<text text-anchor="middle" x="769" y="-15.5" font-family="sans" font-size="10.00" fill="#000000">all</text>
+</g>
+<!-- 1 -->
+<g id="node2" class="node">
+<title>1</title>
+<path fill="none" stroke="#d8cb56" stroke-width="2" d="M136,-252C136,-252 12,-252 12,-252 6,-252 0,-246 0,-240 0,-240 0,-228 0,-228 0,-222 6,-216 12,-216 12,-216 136,-216 136,-216 142,-216 148,-222 148,-228 148,-228 148,-240 148,-240 148,-246 142,-252 136,-252"/>
+<text text-anchor="middle" x="74" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">genometools_on_raw_data</text>
+</g>
+<!-- 1->0 -->
+<g id="edge15" class="edge">
+<title>1->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M99.5393,-215.8176C149.1815,-181.4737 263.2946,-107.3462 371,-72 437.7811,-50.0841 646.1884,-29.1986 731.7583,-21.3109"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="732.1653,-24.7884 741.8051,-20.3926 731.5281,-17.8174 732.1653,-24.7884"/>
+</g>
+<!-- 20 -->
+<g id="node21" class="node">
+<title>20</title>
+<path fill="none" stroke="#56d8c9" stroke-width="2" d="M711,-180C711,-180 681,-180 681,-180 675,-180 669,-174 669,-168 669,-168 669,-156 669,-156 669,-150 675,-144 681,-144 681,-144 711,-144 711,-144 717,-144 723,-150 723,-156 723,-156 723,-168 723,-168 723,-174 717,-180 711,-180"/>
+<text text-anchor="middle" x="696" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">report</text>
+</g>
+<!-- 1->20 -->
+<g id="edge46" class="edge">
+<title>1->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M148.133,-217.4858C151.1229,-216.9584 154.0872,-216.4602 157,-216 344.4541,-186.3819 571.2971,-169.904 658.9529,-164.254"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="659.1831,-167.7465 668.9406,-163.6185 658.7385,-160.7607 659.1831,-167.7465"/>
+</g>
+<!-- 2 -->
+<g id="node3" class="node">
+<title>2</title>
+<path fill="none" stroke="#59d856" stroke-width="2" d="M735.5,-252C735.5,-252 674.5,-252 674.5,-252 668.5,-252 662.5,-246 662.5,-240 662.5,-240 662.5,-228 662.5,-228 662.5,-222 668.5,-216 674.5,-216 674.5,-216 735.5,-216 735.5,-216 741.5,-216 747.5,-222 747.5,-228 747.5,-228 747.5,-240 747.5,-240 747.5,-246 741.5,-252 735.5,-252"/>
+<text text-anchor="middle" x="705" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">genomescope</text>
+</g>
+<!-- 2->0 -->
+<g id="edge13" class="edge">
+<title>2->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M715.2716,-215.9496C720.8057,-205.6614 727.418,-192.3864 732,-180 748.7262,-134.7848 759.3817,-79.5701 764.7649,-46.6773"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="768.2812,-46.8494 766.3895,-36.4248 761.3675,-45.7538 768.2812,-46.8494"/>
+</g>
+<!-- 2->20 -->
+<g id="edge44" class="edge">
+<title>2->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M702.7289,-215.8314C701.7664,-208.131 700.6218,-198.9743 699.5521,-190.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="703.0151,-189.9019 698.3017,-180.4133 696.0691,-190.7702 703.0151,-189.9019"/>
+</g>
+<!-- 3 -->
+<g id="node4" class="node">
+<title>3</title>
+<path fill="none" stroke="#5673d8" stroke-width="2" d="M720.5,-324C720.5,-324 689.5,-324 689.5,-324 683.5,-324 677.5,-318 677.5,-312 677.5,-312 677.5,-300 677.5,-300 677.5,-294 683.5,-288 689.5,-288 689.5,-288 720.5,-288 720.5,-288 726.5,-288 732.5,-294 732.5,-300 732.5,-300 732.5,-312 732.5,-312 732.5,-318 726.5,-324 720.5,-324"/>
+<text text-anchor="middle" x="705" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">jellyfish</text>
+</g>
+<!-- 3->2 -->
+<g id="edge16" class="edge">
+<title>3->2</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M705,-287.8314C705,-280.131 705,-270.9743 705,-262.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="708.5001,-262.4132 705,-252.4133 701.5001,-262.4133 708.5001,-262.4132"/>
+</g>
+<!-- 9 -->
+<g id="node10" class="node">
+<title>9</title>
+<path fill="none" stroke="#56d873" stroke-width="2" d="M632,-252C632,-252 602,-252 602,-252 596,-252 590,-246 590,-240 590,-240 590,-228 590,-228 590,-222 596,-216 602,-216 602,-216 632,-216 632,-216 638,-216 644,-222 644,-228 644,-228 644,-240 644,-240 644,-246 638,-252 632,-252"/>
+<text text-anchor="middle" x="617" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">kat</text>
+</g>
+<!-- 3->9 -->
+<g id="edge21" class="edge">
+<title>3->9</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M682.7939,-287.8314C671.955,-278.9632 658.7556,-268.1637 647.0322,-258.5718"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="649.155,-255.7864 639.199,-252.1628 644.7223,-261.2041 649.155,-255.7864"/>
+</g>
+<!-- 15 -->
+<g id="node16" class="node">
+<title>15</title>
+<path fill="none" stroke="#d86656" stroke-width="2" d="M927.5,-252C927.5,-252 886.5,-252 886.5,-252 880.5,-252 874.5,-246 874.5,-240 874.5,-240 874.5,-228 874.5,-228 874.5,-222 880.5,-216 886.5,-216 886.5,-216 927.5,-216 927.5,-216 933.5,-216 939.5,-222 939.5,-228 939.5,-228 939.5,-240 939.5,-240 939.5,-246 933.5,-252 927.5,-252"/>
+<text text-anchor="middle" x="907" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">purge_kat</text>
+</g>
+<!-- 3->15 -->
+<g id="edge29" class="edge">
+<title>3->15</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M732.5906,-292.313C736.0602,-290.7755 739.5886,-289.2979 743,-288 793.4297,-268.8133 810.6621,-271.161 865.0412,-252.1161"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="866.2502,-255.4008 874.4805,-248.7291 863.886,-248.8121 866.2502,-255.4008"/>
+</g>
+<!-- 4 -->
+<g id="node5" class="node">
+<title>4</title>
+<path fill="none" stroke="#5663d8" stroke-width="2" d="M304,-252C304,-252 178,-252 178,-252 172,-252 166,-246 166,-240 166,-240 166,-228 166,-228 166,-222 172,-216 178,-216 178,-216 304,-216 304,-216 310,-216 316,-222 316,-228 316,-228 316,-240 316,-240 316,-246 310,-252 304,-252"/>
+<text text-anchor="middle" x="241" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">genometools_on_assembly</text>
+</g>
+<!-- 4->0 -->
+<g id="edge11" class="edge">
+<title>4->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M256.2603,-215.7724C286.216,-181.3512 356.4925,-107.0975 433,-72 485.8272,-47.7658 655.9142,-28.8862 731.8209,-21.4448"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="732.2681,-24.918 741.8846,-20.4713 731.594,-17.9505 732.2681,-24.918"/>
+</g>
+<!-- 4->20 -->
+<g id="edge42" class="edge">
+<title>4->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M316.0569,-217.6576C319.0743,-217.0826 322.0642,-216.5276 325,-216 446.618,-194.1436 591.8842,-175.007 658.8425,-166.576"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="659.4136,-170.0319 668.901,-165.316 658.5434,-163.0862 659.4136,-170.0319"/>
+</g>
+<!-- 5 -->
+<g id="node6" class="node">
+<title>5</title>
+<path fill="none" stroke="#9fd856" stroke-width="2" d="M628.5,-540C628.5,-540 551.5,-540 551.5,-540 545.5,-540 539.5,-534 539.5,-528 539.5,-528 539.5,-516 539.5,-516 539.5,-510 545.5,-504 551.5,-504 551.5,-504 628.5,-504 628.5,-504 634.5,-504 640.5,-510 640.5,-516 640.5,-516 640.5,-528 640.5,-528 640.5,-534 634.5,-540 628.5,-540"/>
+<text text-anchor="middle" x="590" y="-519.5" font-family="sans" font-size="10.00" fill="#000000">hap_gfa_to_fasta</text>
+</g>
+<!-- 5->4 -->
+<g id="edge17" class="edge">
+<title>5->4</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M555.689,-503.8043C538.1887,-493.9913 516.8811,-481.2054 499,-468 406.8037,-399.9121 309.7037,-304.3778 265.4985,-259.3605"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="267.8629,-256.7723 258.3688,-252.0699 262.8583,-261.6666 267.8629,-256.7723"/>
+</g>
+<!-- 8 -->
+<g id="node9" class="node">
+<title>8</title>
+<path fill="none" stroke="#5692d8" stroke-width="2" d="M487,-324C487,-324 415,-324 415,-324 409,-324 403,-318 403,-312 403,-312 403,-300 403,-300 403,-294 409,-288 415,-288 415,-288 487,-288 487,-288 493,-288 499,-294 499,-300 499,-300 499,-312 499,-312 499,-318 493,-324 487,-324"/>
+<text text-anchor="middle" x="451" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">unzip_hap_fasta</text>
+</g>
+<!-- 5->8 -->
+<g id="edge20" class="edge">
+<title>5->8</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M563.6467,-503.9739C551.0609,-494.3891 536.494,-481.7538 526,-468 493.9697,-426.0199 471.354,-368.1635 459.8086,-334.1571"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="463.0483,-332.8064 456.5828,-324.4131 456.403,-335.0064 463.0483,-332.8064"/>
+</g>
+<!-- 5->9 -->
+<g id="edge22" class="edge">
+<title>5->9</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M593.0424,-503.5454C594.6818,-493.1306 596.641,-479.8638 598,-468 606.4665,-394.086 612.5189,-306.6126 615.2955,-262.4929"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="618.8053,-262.442 615.9303,-252.2447 611.8187,-262.0091 618.8053,-262.442"/>
+</g>
+<!-- 12 -->
+<g id="node13" class="node">
+<title>12</title>
+<path fill="none" stroke="#56d8b9" stroke-width="2" d="M1021.5,-396C1021.5,-396 972.5,-396 972.5,-396 966.5,-396 960.5,-390 960.5,-384 960.5,-384 960.5,-372 960.5,-372 960.5,-366 966.5,-360 972.5,-360 972.5,-360 1021.5,-360 1021.5,-360 1027.5,-360 1033.5,-366 1033.5,-372 1033.5,-372 1033.5,-384 1033.5,-384 1033.5,-390 1027.5,-396 1021.5,-396"/>
+<text text-anchor="middle" x="997" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">purge_dups</text>
+</g>
+<!-- 5->12 -->
+<g id="edge26" class="edge">
+<title>5->12</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M640.7239,-504.0535C720.3611,-475.8772 873.5598,-421.6742 950.5018,-394.4515"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="952.1308,-397.5878 960.3907,-390.9527 949.7959,-390.9886 952.1308,-397.5878"/>
+</g>
+<!-- 13 -->
+<g id="node14" class="node">
+<title>13</title>
+<path fill="none" stroke="#5682d8" stroke-width="2" d="M1040.5,-468C1040.5,-468 953.5,-468 953.5,-468 947.5,-468 941.5,-462 941.5,-456 941.5,-456 941.5,-444 941.5,-444 941.5,-438 947.5,-432 953.5,-432 953.5,-432 1040.5,-432 1040.5,-432 1046.5,-432 1052.5,-438 1052.5,-444 1052.5,-444 1052.5,-456 1052.5,-456 1052.5,-462 1046.5,-468 1040.5,-468"/>
+<text text-anchor="middle" x="997" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">purge_dups_cutoffs</text>
+</g>
+<!-- 5->13 -->
+<g id="edge27" class="edge">
+<title>5->13</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M640.7239,-513.0267C714.1887,-500.0305 850.2539,-475.96 931.3067,-461.6214"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="932.1581,-465.0252 941.3955,-459.8367 930.9387,-458.1323 932.1581,-465.0252"/>
+</g>
+<!-- 23 -->
+<g id="node24" class="node">
+<title>23</title>
+<path fill="none" stroke="#afd856" stroke-width="2" d="M577,-468C577,-468 547,-468 547,-468 541,-468 535,-462 535,-456 535,-456 535,-444 535,-444 535,-438 541,-432 547,-432 547,-432 577,-432 577,-432 583,-432 589,-438 589,-444 589,-444 589,-456 589,-456 589,-462 583,-468 577,-468"/>
+<text text-anchor="middle" x="562" y="-447.5" font-family="sans" font-size="10.00" fill="#000000">cp_hap</text>
+</g>
+<!-- 5->23 -->
+<g id="edge49" class="edge">
+<title>5->23</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M582.9344,-503.8314C579.874,-495.9617 576.2221,-486.5712 572.8318,-477.8533"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="576.0473,-476.4647 569.1607,-468.4133 569.5232,-479.0019 576.0473,-476.4647"/>
+</g>
+<!-- 6 -->
+<g id="node7" class="node">
+<title>6</title>
+<path fill="none" stroke="#d8bc56" stroke-width="2" d="M605,-612C605,-612 575,-612 575,-612 569,-612 563,-606 563,-600 563,-600 563,-588 563,-588 563,-582 569,-576 575,-576 575,-576 605,-576 605,-576 611,-576 617,-582 617,-588 617,-588 617,-600 617,-600 617,-606 611,-612 605,-612"/>
+<text text-anchor="middle" x="590" y="-591.5" font-family="sans" font-size="10.00" fill="#000000">hifiasm</text>
+</g>
+<!-- 6->5 -->
+<g id="edge18" class="edge">
+<title>6->5</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M590,-575.8314C590,-568.131 590,-558.9743 590,-550.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="593.5001,-550.4132 590,-540.4133 586.5001,-550.4133 593.5001,-550.4132"/>
+</g>
+<!-- 7 -->
+<g id="node8" class="node">
+<title>7</title>
+<path fill="none" stroke="#bed856" stroke-width="2" d="M376,-252C376,-252 346,-252 346,-252 340,-252 334,-246 334,-240 334,-240 334,-228 334,-228 334,-222 340,-216 346,-216 346,-216 376,-216 376,-216 382,-216 388,-222 388,-228 388,-228 388,-240 388,-240 388,-246 382,-252 376,-252"/>
+<text text-anchor="middle" x="361" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">busco</text>
+</g>
+<!-- 7->0 -->
+<g id="edge4" class="edge">
+<title>7->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M368.6017,-215.9044C383.975,-181.7088 422.1989,-107.824 479,-72 520.5285,-45.8083 662.5351,-28.5579 731.208,-21.5482"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="731.9713,-24.9894 741.5733,-20.5113 731.2745,-18.0241 731.9713,-24.9894"/>
+</g>
+<!-- 7->20 -->
+<g id="edge37" class="edge">
+<title>7->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M388.131,-219.7716C391.4033,-218.3645 394.741,-217.0656 398,-216 489.0354,-186.2333 601.4018,-171.4869 658.6479,-165.4566"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="659.0862,-168.9301 668.678,-164.4304 658.3736,-161.9665 659.0862,-168.9301"/>
+</g>
+<!-- 8->7 -->
+<g id="edge19" class="edge">
+<title>8->7</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M428.2892,-287.8314C417.204,-278.9632 403.7046,-268.1637 391.7148,-258.5718"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="393.6987,-255.6768 383.7035,-252.1628 389.3258,-261.1429 393.6987,-255.6768"/>
+</g>
+<!-- 10 -->
+<g id="node11" class="node">
+<title>10</title>
+<path fill="none" stroke="#c6d856" stroke-width="2" d="M483.5,-252C483.5,-252 418.5,-252 418.5,-252 412.5,-252 406.5,-246 406.5,-240 406.5,-240 406.5,-228 406.5,-228 406.5,-222 412.5,-216 418.5,-216 418.5,-216 483.5,-216 483.5,-216 489.5,-216 495.5,-222 495.5,-228 495.5,-228 495.5,-240 495.5,-240 495.5,-246 489.5,-252 483.5,-252"/>
+<text text-anchor="middle" x="451" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">find_telomeres</text>
+</g>
+<!-- 8->10 -->
+<g id="edge23" class="edge">
+<title>8->10</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M451,-287.8314C451,-280.131 451,-270.9743 451,-262.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="454.5001,-262.4132 451,-252.4133 447.5001,-262.4133 454.5001,-262.4132"/>
+</g>
+<!-- 9->0 -->
+<g id="edge14" class="edge">
+<title>9->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M614.6552,-215.7578C611.5127,-183.239 609.7096,-114.6717 643,-72 664.5778,-44.3415 703.0788,-30.6313 731.8617,-23.9764"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="732.9207,-27.3297 741.9769,-21.8311 731.4683,-20.4821 732.9207,-27.3297"/>
+</g>
+<!-- 9->20 -->
+<g id="edge45" class="edge">
+<title>9->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M636.935,-215.8314C646.4783,-207.1337 658.0599,-196.5783 668.4306,-187.1265"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="671.038,-189.4857 676.0713,-180.1628 666.3228,-184.3121 671.038,-189.4857"/>
+</g>
+<!-- 10->0 -->
+<g id="edge1" class="edge">
+<title>10->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M452.0719,-215.7403C455.0875,-181.9324 466.55,-109.6148 510,-72 542.8135,-43.5933 668.3208,-27.6995 731.7871,-21.3245"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="732.1709,-24.8038 741.7831,-20.3478 731.4901,-17.8369 732.1709,-24.8038"/>
+</g>
+<!-- 10->20 -->
+<g id="edge35" class="edge">
+<title>10->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M495.6519,-220.8778C542.5168,-207.1053 615.3375,-185.7049 659.0751,-172.8514"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="660.1331,-176.1886 668.7405,-170.011 658.1594,-169.4726 660.1331,-176.1886"/>
+</g>
+<!-- 11 -->
+<g id="node12" class="node">
+<title>11</title>
+<path fill="none" stroke="#80d856" stroke-width="2" d="M1024,-252C1024,-252 970,-252 970,-252 964,-252 958,-246 958,-240 958,-240 958,-228 958,-228 958,-222 964,-216 970,-216 970,-216 1024,-216 1024,-216 1030,-216 1036,-222 1036,-228 1036,-228 1036,-240 1036,-240 1036,-246 1030,-252 1024,-252"/>
+<text text-anchor="middle" x="997" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">purge_busco</text>
+</g>
+<!-- 11->0 -->
+<g id="edge7" class="edge">
+<title>11->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M978.5547,-215.8096C947.8417,-185.6125 884.1418,-123.3716 829,-72 818.6228,-62.3323 807.0734,-51.8691 796.9004,-42.7503"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="799.2199,-40.1292 789.4315,-36.0746 794.555,-45.3483 799.2199,-40.1292"/>
+</g>
+<!-- 11->20 -->
+<g id="edge39" class="edge">
+<title>11->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M957.8675,-218.7845C954.8839,-217.7907 951.9043,-216.8494 949,-216 873.5413,-193.9312 782.9846,-176.7947 733.259,-168.1638"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="733.736,-164.6945 723.288,-166.4524 732.5518,-171.5936 733.736,-164.6945"/>
+</g>
+<!-- 12->11 -->
+<g id="edge24" class="edge">
+<title>12->11</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M997,-359.7623C997,-335.201 997,-291.2474 997,-262.3541"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1000.5001,-262.0896 997,-252.0896 993.5001,-262.0897 1000.5001,-262.0896"/>
+</g>
+<!-- 14 -->
+<g id="node15" class="node">
+<title>14</title>
+<path fill="none" stroke="#d8ac56" stroke-width="2" d="M1155.5,-252C1155.5,-252 1066.5,-252 1066.5,-252 1060.5,-252 1054.5,-246 1054.5,-240 1054.5,-240 1054.5,-228 1054.5,-228 1054.5,-222 1060.5,-216 1066.5,-216 1066.5,-216 1155.5,-216 1155.5,-216 1161.5,-216 1167.5,-222 1167.5,-228 1167.5,-228 1167.5,-240 1167.5,-240 1167.5,-246 1161.5,-252 1155.5,-252"/>
+<text text-anchor="middle" x="1111" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">purge_genometools</text>
+</g>
+<!-- 12->14 -->
+<g id="edge28" class="edge">
+<title>12->14</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1011.4382,-359.7623C1031.3965,-334.5518 1067.5293,-288.9103 1090.3413,-260.0952"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1093.2162,-262.1026 1096.6791,-252.0896 1087.7278,-257.7576 1093.2162,-262.1026"/>
+</g>
+<!-- 12->15 -->
+<g id="edge30" class="edge">
+<title>12->15</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M985.6014,-359.7623C969.9802,-334.7682 941.8077,-289.6924 923.7755,-260.8409"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="926.574,-258.7146 918.306,-252.0896 920.638,-262.4246 926.574,-258.7146"/>
+</g>
+<!-- 16 -->
+<g id="node17" class="node">
+<title>16</title>
+<path fill="none" stroke="#d88d56" stroke-width="2" d="M1296,-252C1296,-252 1198,-252 1198,-252 1192,-252 1186,-246 1186,-240 1186,-240 1186,-228 1186,-228 1186,-222 1192,-216 1198,-216 1198,-216 1296,-216 1296,-216 1302,-216 1308,-222 1308,-228 1308,-228 1308,-240 1308,-240 1308,-246 1302,-252 1296,-252"/>
+<text text-anchor="middle" x="1247" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">purge_find_telomeres</text>
+</g>
+<!-- 12->16 -->
+<g id="edge31" class="edge">
+<title>12->16</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1028.4095,-359.9081C1073.5952,-333.8812 1156.9584,-285.8639 1206.652,-257.2404"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1208.6039,-260.1553 1215.5223,-252.1311 1205.11,-254.0896 1208.6039,-260.1553"/>
+</g>
+<!-- 18 -->
+<g id="node19" class="node">
+<title>18</title>
+<path fill="none" stroke="#8fd856" stroke-width="2" d="M1279.5,-180C1279.5,-180 1216.5,-180 1216.5,-180 1210.5,-180 1204.5,-174 1204.5,-168 1204.5,-168 1204.5,-156 1204.5,-156 1204.5,-150 1210.5,-144 1216.5,-144 1216.5,-144 1279.5,-144 1279.5,-144 1285.5,-144 1291.5,-150 1291.5,-156 1291.5,-156 1291.5,-168 1291.5,-168 1291.5,-174 1285.5,-180 1279.5,-180"/>
+<text text-anchor="middle" x="1248" y="-159.5" font-family="sans" font-size="10.00" fill="#000000">link_final_asm</text>
+</g>
+<!-- 12->18 -->
+<g id="edge33" class="edge">
+<title>12->18</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1033.7241,-369.0603C1110.5371,-349.5387 1283.8146,-300.9154 1317,-252 1325.9827,-238.7595 1324.008,-230.3836 1317,-216 1311.2696,-204.2386 1301.6013,-194.2849 1291.2879,-186.2518"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1293.0974,-183.2412 1282.9415,-180.2233 1288.9987,-188.9159 1293.0974,-183.2412"/>
+</g>
+<!-- 26 -->
+<g id="node27" class="node">
+<title>26</title>
+<path fill="none" stroke="#56d882" stroke-width="2" d="M916.5,-324C916.5,-324 879.5,-324 879.5,-324 873.5,-324 867.5,-318 867.5,-312 867.5,-312 867.5,-300 867.5,-300 867.5,-294 873.5,-288 879.5,-288 879.5,-288 916.5,-288 916.5,-288 922.5,-288 928.5,-294 928.5,-300 928.5,-300 928.5,-312 928.5,-312 928.5,-318 922.5,-324 916.5,-324"/>
+<text text-anchor="middle" x="898" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">purge_cp</text>
+</g>
+<!-- 12->26 -->
+<g id="edge53" class="edge">
+<title>12->26</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M972.0181,-359.8314C959.7072,-350.8779 944.6893,-339.9558 931.4063,-330.2955"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="933.1199,-327.214 922.9739,-324.1628 929.0027,-332.8752 933.1199,-327.214"/>
+</g>
+<!-- 13->12 -->
+<g id="edge25" class="edge">
+<title>13->12</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M997,-431.8314C997,-424.131 997,-414.9743 997,-406.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1000.5001,-406.4132 997,-396.4133 993.5001,-406.4133 1000.5001,-406.4132"/>
+</g>
+<!-- 17 -->
+<g id="node18" class="node">
+<title>17</title>
+<path fill="none" stroke="#56c9d8" stroke-width="2" d="M1299,-108C1299,-108 1247,-108 1247,-108 1241,-108 1235,-102 1235,-96 1235,-96 1235,-84 1235,-84 1235,-78 1241,-72 1247,-72 1247,-72 1299,-72 1299,-72 1305,-72 1311,-78 1311,-84 1311,-84 1311,-96 1311,-96 1311,-102 1305,-108 1299,-108"/>
+<text text-anchor="middle" x="1273" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">cutoffs_eval</text>
+</g>
+<!-- 13->17 -->
+<g id="edge32" class="edge">
+<title>13->17</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1052.6276,-440.7111C1157.4965,-421.6152 1374,-373.9615 1374,-306 1374,-306 1374,-306 1374,-234 1374,-184.9451 1334.2284,-140.7517 1304.5999,-114.6353"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="1306.809,-111.9191 1296.9356,-108.0763 1302.2576,-117.2375 1306.809,-111.9191"/>
+</g>
+<!-- 14->0 -->
+<g id="edge12" class="edge">
+<title>14->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1083.8769,-215.8627C1038.2536,-185.4814 943.0854,-122.6518 861,-72 842.7811,-60.7578 822.2576,-48.6583 805.2255,-38.7678"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="806.5672,-35.5004 796.1591,-33.5198 803.0604,-41.5587 806.5672,-35.5004"/>
+</g>
+<!-- 14->20 -->
+<g id="edge43" class="edge">
+<title>14->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1054.2177,-218.0772C1051.1077,-217.3417 1048.0202,-216.6434 1045,-216 932.5289,-192.0416 797.5267,-174.2035 733.3801,-166.378"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="733.6896,-162.89 723.3419,-165.1648 732.8496,-169.8394 733.6896,-162.89"/>
+</g>
+<!-- 15->0 -->
+<g id="edge2" class="edge">
+<title>15->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M895.4716,-215.9555C871.1694,-177.9173 814.5803,-89.3431 786.0664,-44.7127"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="788.9261,-42.6877 780.5927,-36.1451 783.0272,-46.4564 788.9261,-42.6877"/>
+</g>
+<!-- 15->20 -->
+<g id="edge36" class="edge">
+<title>15->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M874.455,-219.3397C871.6109,-218.1719 868.764,-217.0424 866,-216 820.7722,-198.9437 767.4965,-182.6111 732.8015,-172.4609"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="733.6753,-169.07 723.0959,-169.6409 731.7222,-175.7921 733.6753,-169.07"/>
+</g>
+<!-- 16->0 -->
+<g id="edge8" class="edge">
+<title>16->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1210.28,-215.968C1147.5514,-185.3424 1015.519,-121.6554 902,-72 869.6675,-57.8572 832.4089,-42.8375 805.5673,-32.2387"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="806.7651,-28.9488 796.178,-28.5436 804.2017,-35.4626 806.7651,-28.9488"/>
+</g>
+<!-- 16->20 -->
+<g id="edge40" class="edge">
+<title>16->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1185.6478,-217.7061C1182.7321,-217.0948 1179.8385,-216.5216 1177,-216 1013.073,-185.8748 814.4224,-170.015 733.2586,-164.3992"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="733.2652,-160.8917 723.0506,-163.7044 732.7898,-167.8755 733.2652,-160.8917"/>
+</g>
+<!-- 17->0 -->
+<g id="edge3" class="edge">
+<title>17->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1234.7596,-80.8678C1221.0144,-77.7812 1205.3608,-74.4899 1191,-72 1049.844,-47.5257 880.336,-29.1392 806.4687,-21.6649"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="806.5787,-18.1585 796.279,-20.6419 805.8793,-25.1234 806.5787,-18.1585"/>
+</g>
+<!-- 18->0 -->
+<g id="edge5" class="edge">
+<title>18->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M1221.3691,-143.9882C1189.5927,-123.3636 1134.1893,-90.0996 1082,-72 985.9157,-38.6774 865.8257,-25.3411 806.1861,-20.4886"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="806.3573,-16.9914 796.1156,-19.7038 805.8134,-23.9703 806.3573,-16.9914"/>
+</g>
+<!-- 19 -->
+<g id="node20" class="node">
+<title>19</title>
+<path fill="none" stroke="#56d8a2" stroke-width="2" d="M728.5,-108C728.5,-108 663.5,-108 663.5,-108 657.5,-108 651.5,-102 651.5,-96 651.5,-96 651.5,-84 651.5,-84 651.5,-78 657.5,-72 663.5,-72 663.5,-72 728.5,-72 728.5,-72 734.5,-72 740.5,-78 740.5,-84 740.5,-84 740.5,-96 740.5,-96 740.5,-102 734.5,-108 728.5,-108"/>
+<text text-anchor="middle" x="696" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">rename_report</text>
+</g>
+<!-- 19->0 -->
+<g id="edge10" class="edge">
+<title>19->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M714.421,-71.8314C723.1529,-63.219 733.7317,-52.7851 743.2423,-43.4048"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="745.923,-45.6769 750.5849,-36.1628 741.0075,-40.6931 745.923,-45.6769"/>
+</g>
+<!-- 20->19 -->
+<g id="edge34" class="edge">
+<title>20->19</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M696,-143.8314C696,-136.131 696,-126.9743 696,-118.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="699.5001,-118.4132 696,-108.4133 692.5001,-118.4133 699.5001,-118.4132"/>
+</g>
+<!-- 21 -->
+<g id="node22" class="node">
+<title>21</title>
+<path fill="none" stroke="#d88556" stroke-width="2" d="M578,-324C578,-324 544,-324 544,-324 538,-324 532,-318 532,-312 532,-312 532,-300 532,-300 532,-294 538,-288 544,-288 544,-288 578,-288 578,-288 584,-288 590,-294 590,-300 590,-300 590,-312 590,-312 590,-318 584,-324 578,-324"/>
+<text text-anchor="middle" x="561" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">merqury</text>
+</g>
+<!-- 21->0 -->
+<g id="edge6" class="edge">
+<title>21->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M560.5729,-287.5068C560.3533,-277.08 560.1094,-263.814 560,-252 559.2193,-167.6762 558.984,-130.2079 620,-72 650.7188,-42.6949 698.5374,-29.0986 731.6826,-22.9208"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="732.6263,-26.31 741.8881,-21.1652 731.4395,-19.4113 732.6263,-26.31"/>
+</g>
+<!-- 21->20 -->
+<g id="edge38" class="edge">
+<title>21->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M560.5269,-287.7828C560.9552,-268.0437 564.4916,-236.6148 581,-216 600.4744,-191.6814 633.4687,-177.7591 659.1348,-170.1642"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="660.2107,-173.4982 668.9196,-167.4646 658.3489,-166.7503 660.2107,-173.4982"/>
+</g>
+<!-- 22 -->
+<g id="node23" class="node">
+<title>22</title>
+<path fill="none" stroke="#56a2d8" stroke-width="2" d="M751,-396C751,-396 721,-396 721,-396 715,-396 709,-390 709,-384 709,-384 709,-372 709,-372 709,-366 715,-360 721,-360 721,-360 751,-360 751,-360 757,-360 763,-366 763,-372 763,-372 763,-384 763,-384 763,-390 757,-396 751,-396"/>
+<text text-anchor="middle" x="736" y="-375.5" font-family="sans" font-size="10.00" fill="#000000">meryl</text>
+</g>
+<!-- 22->21 -->
+<g id="edge48" class="edge">
+<title>22->21</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M708.6563,-366.75C679.3459,-354.6909 632.5808,-335.4504 599.5445,-321.8583"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="600.7721,-318.5788 590.1925,-318.0106 598.1087,-325.0523 600.7721,-318.5788"/>
+</g>
+<!-- 25 -->
+<g id="node26" class="node">
+<title>25</title>
+<path fill="none" stroke="#d89c56" stroke-width="2" d="M834.5,-324C834.5,-324 763.5,-324 763.5,-324 757.5,-324 751.5,-318 751.5,-312 751.5,-312 751.5,-300 751.5,-300 751.5,-294 757.5,-288 763.5,-288 763.5,-288 834.5,-288 834.5,-288 840.5,-288 846.5,-294 846.5,-300 846.5,-300 846.5,-312 846.5,-312 846.5,-318 840.5,-324 834.5,-324"/>
+<text text-anchor="middle" x="799" y="-303.5" font-family="sans" font-size="10.00" fill="#000000">purge_cp_meryl</text>
+</g>
+<!-- 22->25 -->
+<g id="edge52" class="edge">
+<title>22->25</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M751.8976,-359.8314C759.2278,-351.454 768.066,-341.3531 776.0969,-332.1749"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="778.9373,-334.2438 782.8884,-324.4133 773.6693,-329.6343 778.9373,-334.2438"/>
+</g>
+<!-- 23->21 -->
+<g id="edge47" class="edge">
+<title>23->21</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M561.8733,-431.7623C561.7028,-407.201 561.3976,-363.2474 561.1969,-334.3541"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="564.6951,-334.065 561.1256,-324.0896 557.6952,-334.1137 564.6951,-334.065"/>
+</g>
+<!-- 24 -->
+<g id="node25" class="node">
+<title>24</title>
+<path fill="none" stroke="#70d856" stroke-width="2" d="M844.5,-252C844.5,-252 777.5,-252 777.5,-252 771.5,-252 765.5,-246 765.5,-240 765.5,-240 765.5,-228 765.5,-228 765.5,-222 771.5,-216 777.5,-216 777.5,-216 844.5,-216 844.5,-216 850.5,-216 856.5,-222 856.5,-228 856.5,-228 856.5,-240 856.5,-240 856.5,-246 850.5,-252 844.5,-252"/>
+<text text-anchor="middle" x="811" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">purge_merqury</text>
+</g>
+<!-- 24->0 -->
+<g id="edge9" class="edge">
+<title>24->0</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M808.3748,-215.927C803.9016,-185.8988 794.1919,-123.895 783,-72 781.1911,-63.6126 778.9576,-54.5632 776.8099,-46.3145"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="780.1269,-45.1686 774.1738,-36.4044 773.3621,-46.9681 780.1269,-45.1686"/>
+</g>
+<!-- 24->20 -->
+<g id="edge41" class="edge">
+<title>24->20</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M781.9806,-215.8314C766.71,-206.2706 747.8539,-194.4651 731.6949,-184.3481"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="733.3682,-181.2664 723.0351,-178.9263 729.6536,-187.1995 733.3682,-181.2664"/>
+</g>
+<!-- 25->24 -->
+<g id="edge51" class="edge">
+<title>25->24</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M802.0281,-287.8314C803.3115,-280.131 804.8376,-270.9743 806.2639,-262.4166"/>
+<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="809.7394,-262.8526 807.9311,-252.4133 802.8347,-261.7018 809.7394,-262.8526"/>
+</g>
+<!-- 26->24 -->
+<g id="edge50" class="edge">
+<title>26->24</title>
+<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M876.0462,-287.8314C865.3305,-278.9632 852.2811,-268.1637 840.691,-258.5718"/>
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+</g>
+</g>
+</svg>